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GST Guide

GST reconciliation for e-commerce businesses

E-commerce sellers reconcile three different numbers: gross sales, what the marketplace actually settled after fees and TCS, and the GST collected at 1% by the marketplace under section 52. Getting these to tie out is the core of e-commerce GST reconciliation.

By Flick AI Team

Published 4 Sept 2026 · Last updated 4 Sept 2026

Why e-commerce GST has extra layers

Beyond the 18% (or lower) GST on your product, the marketplace deducts a 1% TCS, commission, and shipping before paying you. Reconciling the settlement to your books means accounting for every deduction.

  • Marketplace TCS at 1% (section 52).
  • Commission and fees deducted before settlement.
  • GST on commission and shipping.
  • Settlement vs gross sales mismatch.

How AI reconciliation helps e-commerce sellers

AI reconciliation matches marketplace settlements to order and invoice data, accounts for TCS and fees, and flags any gap between what you sold and what you were paid.

  • Match settlements to orders.
  • Account for 1% TCS.
  • Flag commission and fee deductions.

Best Fit

Who Flick AI is built for

Flick AI is not trying to be a heavy inventory ERP. It is built for invoice-led businesses and the professionals who serve them: teams where monthly accounting is mostly documents, bank transactions, reconciliations, ledgers, and financial reports.

Low-inventory and non-inventory businesses

Flick AI is best suited for service businesses, consultants, agencies, SaaS companies, professional firms, and other teams that raise and receive invoices every month but do not need heavy inventory accounting.

CAs and consultants in Tier 1 cities

For CAs and finance consultants serving non-inventory-led customers, Flick AI gives a repeatable monthly workflow for document collection, invoice parsing, reconciliation, ledger review, and report preparation.

Founders who want accounting compressed

The goal is simple: founders should focus on business through the month, then spend roughly 1-2 focused hours reviewing bookkeeping and cleaning financial sheets instead of chasing accounting tasks every week.

Product Workflow

See the full monthly accounting walkthrough

This resource focuses on gst reconciliation for e-commerce businesses. For the complete step-by-step workflow, see the main Flick AI guide covering upload, parsing, reconciliation, ledger review, and reports.

Read the full workflow

Key Capabilities

What this means in practice

Tie out settlements

Sales, fees, TCS, and payouts reconciled.

Track TCS

1% marketplace TCS accounted for.

Flag gaps

Catch short settlements early.

E-commerce GST at a glance

ItemRateNote
Product sale (goods)5%–28%By category
Marketplace TCS1%Collected by marketplace (s.52)
Marketplace commission18%On commission charged to you
Shipping / logistics5%–18%Varies

FAQ

Common questions

What is marketplace TCS under GST?

Marketplaces collect 1% TCS (section 52) on your sales and remit it to the government. You reconcile it against your own GST liability.

How does Flick AI help e-commerce sellers?

Flick AI matches marketplace settlements to orders, accounts for TCS and fees, and flags settlement gaps.

Do I pay GST on marketplace commission?

Commission is a service the marketplace provides, so it generally carries 18% GST that you can review as input credit.

Why don't my sales and payouts match?

The marketplace deducts TCS, commission, and shipping before settlement. Reconciliation accounts for each deduction.

Try Flick AI

Test AI accounting on your own monthly workflow

Start with a 14-day free trial or book a demo to see how Flick AI handles invoice parsing, reconciliation, GST/TDS support, and reports for Indian businesses.